Scaffold Ga0222712_10111176

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10111176
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1900
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009073	Metagenome / Metatranscriptome	323	Y
F017827	Metagenome / Metatranscriptome	238	Y
F021984	Metagenome / Metatranscriptome	216	Y
F103233	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_101111761	F021984	N/A	MSYTIPRGYTITPKVKFLRTKDGKKRTQLVELTHKRKGISKLFGNEDYAIKYIQSIEVSKVEASALAGKGAPSIGKSAILTASKDLAAAKELAGDYDDLTADEIKSLT
Ga0222712_101111763	F103233	N/A	MNDEQLYEALIDMGYYFGEYDTDEFDEIGFSEAALNLGYRWDESNMEWSHRDIL
Ga0222712_101111765	F009073	N/A	MKNYQIILTAILSFSVAYFILNGTAAQYVPFAGPENELGCAVIALTMGVLSTYAIDWKSFVNFLNK
Ga0222712_101111766	F017827	N/A	MSYSSVNYESFGNIKNIPANKARVIKAGTPVVTYTTMFGKNYFFPYRTKKQYAEIVQFIKLFRNEDITLKRILSDYSVKMGKYVNESKLRKEIKAEFGFTKSAIDLILSIH