Scaffold Ga0222712

Basic Information
Taxon OID	3300021963 Open in IMG/M
Scaffold ID	Ga0222712_10042284 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021963 Open in IMG/M

Scaffold ID

Ga0222712_10042284 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3475
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3475

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.1516	Long. (^o)	-121.6883	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.1516

Long. (^o)

-121.6883

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018529	Metagenome / Metatranscriptome	234	Y
F023790	Metagenome	208	N
F094947	Metagenome / Metatranscriptome	105	N
F098695	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100422842	F018529	GGAG	MNLQDFKKIFTEYGGAVSPEQLEPLAEFAPDLPLGVKVGYGLRFVTSAKNFKSDLENNIKYQREAHNVEQYVRDVFVPCSAYDKVRNIFGWNNKE
Ga0222712_100422843	F023790	GGA	MKILLQSKRFETTTILEDKKTIYVVTTRGELLPDNKQSKAITFDFQRLDKKKLTKKEEKFSDDVFNHIIKDKP
Ga0222712_100422844	F098695	N/A	MIVDKISSQAGLARFASFVYESKSTGEVARYTIQLGFSYRNCLERSKLALEIESVSLNGLDKQAADELLNSFIASLNGTQENYTKQDIYVDVSDSSGKTVQGIKRNINDNSIQIFGLLHSKVQISPPTIEDKPVKSRPLTIAKNKLRKNLPVGKFREFALEYLNVVKLNGETLELA
Ga0222712_100422845	F094947	N/A	MNYPIKNALRQLVCKVYETATKDKQTITTVSLPGDCWEFEHFVNDNFNFRKLFGNPIKEMDNHLFERNKIVFETNQLTAKEFTDTGIFHYYNQEVKHNDSDFFPTESECVFTWFDFCGNPNFFNLNYCHSWTAKQTHLLTFNLAWRCSDNIPTDILTACKYQTKQQAVLDYLQKVIDTEYKEFRYQITFSIPYVSNHTPMILICITNDIGVIIEDYGLCQKTEKLPDPPALIKVKADKKEVYSDLLNGMSDAAVMDKHSLKTMQLAAHKAWLTMWGKW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222712_10042284

Overview

Ecosystem & Geography

Associated Families

Sequences