NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222712_10042284

Scaffold Ga0222712_10042284


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10042284 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3475
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018529Metagenome / Metatranscriptome234Y
F023790Metagenome208N
F094947Metagenome / Metatranscriptome105N
F098695Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100422842F018529GGAGMNLQDFKKIFTEYGGAVSPEQLEPLAEFAPDLPLGVKVGYGLRFVTSAKNFKSDLENNIKYQREAHNVEQYVRDVFVPCSAYDKVRNIFGWNNKE
Ga0222712_100422843F023790GGAMKILLQSKRFETTTILEDKKTIYVVTTRGELLPDNKQSKAITFDFQRLDKKKLTKKEEKFSDDVFNHIIKDKP
Ga0222712_100422844F098695N/AMIVDKISSQAGLARFASFVYESKSTGEVARYTIQLGFSYRNCLERSKLALEIESVSLNGLDKQAADELLNSFIASLNGTQENYTKQDIYVDVSDSSGKTVQGIKRNINDNSIQIFGLLHSKVQISPPTIEDKPVKSRPLTIAKNKLRKNLPVGKFREFALEYLNVVKLNGETLELA
Ga0222712_100422845F094947N/AMNYPIKNALRQLVCKVYETATKDKQTITTVSLPGDCWEFEHFVNDNFNFRKLFGNPIKEMDNHLFERNKIVFETNQLTAKEFTDTGIFHYYNQEVKHNDSDFFPTESECVFTWFDFCGNPNFFNLNYCHSWTAKQTHLLTFNLAWRCSDNIPTDILTACKYQTKQQAVLDYLQKVIDTEYKEFRYQITFSIPYVSNHTPMILICITNDIGVIIEDYGLCQKTEKLPDPPALIKVKADKKEVYSDLLNGMSDAAVMDKHSLKTMQLAAHKAWLTMWGKW

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.