NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10023140

Scaffold Ga0222712_10023140


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10023140 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5104
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F016152Metagenome / Metatranscriptome249Y
F072102Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100231402F072102AGGMADEVIVLTGIKETIDALKQFDKAAARKFNKVINDELSRAEKSADNLVVQFTNPVYGTPMRGWRKTPATNPRTRGGAGWPAWNVSEIQTGIVKSRAQGKVRGDYTTSAGALVNKSAAGAIFEVAGRRGTASKNQFVRYLSNSFGKASRLIWAVVDKDKEAIQRRVAAALEDAKKTLQTNLNGRS
Ga0222712_100231403F016152N/AVEFGISPNDLLDAPDGILEAMLAYLKEKAKANKHGR
Ga0222712_100231404F004344AGGGGGMDGLSLKIKTNDGVDSVFSLRPRTIVAFEQKFGKGLAKLFAEDQKMEHIYFLAWQSLKDNGRVVKPFGPEFLDTLESVEMISDPNLESTATA

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