Scaffold Ga0222712_10014898

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10014898
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6764
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019105	Metagenome	231	Y
F025467	Metagenome	201	Y
F076922	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1001489811	F019105	N/A	MKTRLFLIAGAFILLVIIQIFSSGHGHVVVVEDNVQLNVEKKQLTQANKQLTHSVGQLKAANEVLVEEKQDLETMVAEVIGDLDSTKSVVKDIKKELANEKVINVKQSTGKQFDFEPIKLPTEDGD
Ga0222712_1001489813	F076922	N/A	MDTVSTAPDFGVFAQLGDYGPLGLAVLALGYVAWLFIKRYLDDNKRMKEELEKKPTRRKTRK
Ga0222712_1001489815	F025467	N/A	MKTRYNILLITQIALFVVCLLLVFKPSKQIYPVFSKKIIERRIEGKETVIREKGKLIDNSNKIIAKLNAGLFDLHSQLDSVKTAKDTFNIIQIQDTMIHVLYRRDKEKDAIISAQDTIIVAQRYIINSQDTIITSQAFDIKKLKRQRNISFLLNGILTTGLIIK