Scaffold Ga0222712_10012974

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10012974
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7373
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029720	Metagenome / Metatranscriptome	187	N
F043366	Metagenome	156	Y
F085599	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1001297410	F043366	N/A	MEEGRKYPVLLVTWADTHMSQGGWLELADYEDDGECIVSSVGFHIPVGDPGSKDKHVTLWQSFSKDEGIHAIHIPVGMVRELKILNEPS
Ga0222712_1001297414	F029720	N/A	MAKLQNIIFRIFALFGSSALAAVAGGAIIGVQLWKSAALAGIMACAQVIEKLLRFSVDGSLTKEEIELAFTGAVKAKPEAAE
Ga0222712_1001297415	F085599	N/A	MRKILDYLIDNAWTWAGTGMVLITLSGPTLRQATLITGTVILVHSILTFSKKD