NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10010553

Scaffold Ga0222712_10010553


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10010553 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8426
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y
F009064Metagenome / Metatranscriptome323Y
F057118Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1001055311F008808AGGMDRSIPPCPECGQRFNNVFEATDHILEDDDEFDPALILPNGARLMIGSLLRCLYKYANKPDQIKTITQSTYMTLFTAETQPEAIKDIVEEMIIESQMMEIDNELKQLLEEGK
Ga0222712_1001055314F001531GGAMDWDNIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQRWKAKSVGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE
Ga0222712_1001055319F057118AGGMNTNNYKISINVRAELVYYVSEYDIDRAIELAIDAPYKEWEVSYFDMPTGADVQAEEI
Ga0222712_100105537F009064GAGMIVQLNKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPCYPNALHKKRHSLPDVGENIEVRSVRTQDSIPFWAKDKGKVIIGTKCLDTEYYSEIEIFGVAYPEEFMKPEYYDSYINGWRIPISGFTHE
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