Scaffold Ga0222712_10007652

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10007652
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10389
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (77.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017968	Metagenome	237	Y
F029755	Metagenome	187	Y
F056574	Metagenome	137	Y
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000765210	F029755	AGGA	MTEFKLHYYFDDVVSYDNGTTLENVKVGYDYYPAEINMPHDHNSAEIYDVFIFNLKGDDISCDLPLSEFQHIMSETKIHHARMLKEQNEI
Ga0222712_1000765217	F017968	N/A	MKQTEFLTEPEKGNNLASLSFSERLNLRETMRESEAREWIRRFKKKALEEGRGEAHYWWQQTLLDIAKKRGQPAADDLRKRMNEQKDKK
Ga0222712_100076522	F065786	GAG	VTKDDLINLLRITGAQEASIDAVCAAYDAGWNDALDDYAKRIEPLPFGKDTIGSFGCFIKDAKK
Ga0222712_100076524	F056574	AGGA	MTFSKVFESIFGSEPKFMARASDPITSMEAAESIDSTRLEQMVYEVVAQYPNGCTSDEVMMHFPDHGVQTISPRFAPLIRKGFIEDTGEKRKARSGRSQRVMKIIQQ