Scaffold Ga0222712_10007394

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10007394
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10641
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Yellowstone Lake virophage 5 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042796	Metagenome	157	Y
F064499	Metagenome	128	Y
F073261	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000739410	F042796	GGA	MDEKNFVEVMPGEKKPKDPRMEKMDAQFLPALPATILILGQCGSGKSSALWSMMTKGYVTGKTKKKSIFDEALIYIGTLDAKTSFEKMPIENKLIMTEFEPVSFDEYQTDLKKHQLERLEKGKPMMNTAIVFDDFAGASLMRKAKVGGAPPIEKLCLTSRHESNCTLFYLTQFYKNTGFTSPAVRANITTIILYKMPINEVRKIAEEYAEQYDIDEFIGHYDRAMARRPYNFLVWDRRRPMNADRWTEGFTTPLPPSKKLTDMQKLMERRASVSSAVSGSSTDPD
Ga0222712_100073945	F073261	N/A	MPRKTDYQLGMEAVLNNPKTSFLQNPKTYHEIQSQSGMSMSAMMKHIGGKTRKQKQQGPTDAEKAKERLDAMESANKK
Ga0222712_100073948	F064499	GAG	MTTEAHVINVKERTDRWEAFQAAWKDQPITPIRRDAIKPDGVEILDVYHAVFRKHREILTTAQKMGEKYILIMEDDAVPGKNFARHWESIKCCLHQMDDWDIFNGGMLMIRDCVEKVIRLDYPDGKDPTMLLGVWRGAMAHFVYFKVDSALKKMEDWEAEGKPMFDGWYSHKMNTMACIPYLAQQSDGFSDSAGEHREWSQRFQYEEDMMKHALREFMQADNVVPNLKHDDPRQTILRERDRTIGVDAPVHENCDHETCRFPTPRPTESAWDGHAYS