Scaffold Ga0222712_10007012

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10007012
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11006
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000888	Metagenome / Metatranscriptome	847	Y
F001882	Metagenome / Metatranscriptome	622	Y
F002302	Metagenome	573	Y
F016261	Metagenome / Metatranscriptome	248	N
F032275	Metagenome	180	N
F097197	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000701211	F000888	AGG	MPEQIFAQLDANNVVIDIHVVTAEFMAANPERYPGVWVETFFNTPNKNYAGINWIYDEDTQNFFYPPDPEEP
Ga0222712_1000701215	F097197	GAGG	MPVSTTIQVAGVKDAINNLKKLDPELQKEFKTKATDIAQPAIDAGKKAYEVLEDEEHPYALSGMSRRWTSNGRKIFPFRLNKAIKGVQMKFDTRRKAVGVIMILQKDVATAVWETAGRRSTNRLGASLGFVASDQTRILKPAIEKDIAKVEREIEKIVKDAIRTVERGI
Ga0222712_1000701218	F002302	GGTGG	VPAPYTDLLNEALDDLSATLTAVTGLRVVNDPTKLVPNCVFITAPSFTTIAGNGNIVRMDYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0222712_100070125	F032275	N/A	MARMMPRFTADQVWYELGASFPVTKGMTARLLVAQRNGVIKNTGEITFAERGGEHDHAQRLTIWQSL
Ga0222712_100070126	F016261	AGG	MTENIDPRTDPQFQALKHVMDQITQNKVPIRQPWELAARSTLRAIQHEIDDRNVLDDAELIDVLNQTRIEIKYLLSIITDLDERVKERDAEVSRLERWAHRAN
Ga0222712_100070129	F001882	N/A	MANRAYIVTQQPVVKSALAGTAEWARLACKHSDGSLWNNGTWVVRDVRNRPGTISNHARGLAMDLSYRWLNQKKLGKVDGRKTSLAFIEKCLQNADHLGIQLVIDYAMQRSWRCDRGTWQPLLSVEVSDWWHIEIDPHVANDPIIAKQRWQAVFGVSPTEATKPV