Scaffold Ga0222712_10006849

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10006849
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11173
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F005701	Metagenome / Metatranscriptome	392	Y
F009599	Metagenome / Metatranscriptome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000684913	F005701	AGGAG	MFTNCIAYAKLVYNKKLKAYKVQIAFNVHKKLVGEEIKYVFPVQKQCNYVSGDLLADNLQNEVERTVASAQQHLRTTNIVFVD
Ga0222712_100068494	F009599	AGGAGG	MIRLEGLSKQDIQICNLLWNCDSLEDVERMVNAMPPAYKQRAQVMRELMTAAQLDQVEIVDEAVTQYLHSIASR
Ga0222712_100068496	F000354	GGAG	MAKVNYDAFQSFDINEACDHFDSMDQRAWKKIGKFIVADGQEYVDVMENHFDFEDTADGEYAAFDAGVKYALTKMNLALEAAGIDIEIKEVDLVESMGFMLVRTDDDPESFVKRALKKPVLMVESWVD