Scaffold Ga0222712_10004965

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10004965
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13671
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (91.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F011487	Metagenome / Metatranscriptome	290	Y
F023106	Metagenome / Metatranscriptome	211	Y
F025743	Metagenome	200	Y
F039631	Metagenome / Metatranscriptome	163	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000496518	F011487	AGG	MTFENDEYLDAYYATTCPSCKENAVDDYEEKCTHCLLEEMSSHYNEDIALEMSLGLDY
Ga0222712_1000496519	F025743	GGAGG	MSATINSMELVYADLLTPGQLMEGDLVEIDEIIVDVISIEDDATGDNYTITYKNDYGEEDIFLCDYEHMFKLYVFVEQEEE
Ga0222712_100049653	F023106	GGAG	MSRRVTEEEKVANKLGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYAQNNI
Ga0222712_1000496532	F003965	AGG	MITLTKIEVCKTHTPNKSAISEVGDDQFTFCESCEQNIERWYNDTDPERLPMWTDWKVSK
Ga0222712_1000496533	F039631	AGG	MNTLDKNTIKHSKFGHLDLEQRIHLAATMVANGEVVSFRGASADTYKKVQALANKIKQDREFPQCPCGECD
Ga0222712_1000496534	F095473	AGGA	MNTCKVINCESTELVYSGTDAFMLGITTEEYCYKCANAYAQIDRAMSKVREEYLSSTTTSTTSC