NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10003821

Scaffold Ga0222712_10003821


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10003821 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16142
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (44.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F005633Metagenome / Metatranscriptome394Y
F006107Metagenome / Metatranscriptome381N
F006262Metagenome / Metatranscriptome377Y
F009398Metagenome / Metatranscriptome318N
F018171Metagenome / Metatranscriptome236Y
F096910Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100038211F096910N/AFDTEHLRDMLSRLRKGDIDREWGVHQEPPTVQAEGAYIAEPDLYWRHLDSHVLRPQANRAGRIKHVWVKRNQKWPDHLHDCEIMQLAMVMLWNDLVPTPDN
Ga0222712_1000382115F009398N/AMTTIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAVTDANTPVAGGFQDNVASRILVKFSDWKTFDSTLVSMDTTLYTLDQGTQFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR
Ga0222712_1000382116F005024GAGGMTVDSSKFDAAMKAYLLSTSRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIADYLGKPLGDVNRKSKKTGKRIGKSRLLRRVHLIAQSKEAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKVIRIYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVSTIYNTAMQKAMDDELVELTSHMTEAMLANGKVLEENGIAIK
Ga0222712_1000382117F006107GGAMNAVALRAEKAVADYLAAADWSTSGAGTPTCLTSYSRGLYDDPDLEDVMPNFPRVVVSTNSARPVQRVDLTNEVEVSVELQLSADDTDEAAVLTTVQVLDNRILPLFDDSGASALDAATNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATT
Ga0222712_1000382118F018171N/AMANTQGSKYIFGSPATLALYDAAGALVVSGYVSPDMESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTINFVPANTTSVANAKLSAALPDVNGTCIISGAPVIEMGGYADAINADTGNRWIYAGGGSIKTTATGKATGTITLKRYTNITVTGAATSL
Ga0222712_100038212F006262N/AMFTFTVAIKRSYLRAVYSTLGGVTLLAALAAKSVAASAVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLDDYDLAVYYLGQDGISSPTDTQIYNKMMAVVLVAATSYGGDFSNFRREGTIRTGMT
Ga0222712_100038215F005633AGGMRIATTISVDKAGKSKIVAGPEVDAAAQRTDFNTAKIAEGSKLILWIQGSVAPKIRKG

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