Scaffold Ga0222712_10003821

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10003821
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16142
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (44.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009398	Metagenome / Metatranscriptome	318	N
F018171	Metagenome / Metatranscriptome	236	Y
F096910	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_100038211	F096910	N/A	FDTEHLRDMLSRLRKGDIDREWGVHQEPPTVQAEGAYIAEPDLYWRHLDSHVLRPQANRAGRIKHVWVKRNQKWPDHLHDCEIMQLAMVMLWNDLVPTPDN
Ga0222712_1000382115	F009398	N/A	MTTIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAVTDANTPVAGGFQDNVASRILVKFSDWKTFDSTLVSMDTTLYTLDQGTQFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR
Ga0222712_1000382116	F005024	GAGG	MTVDSSKFDAAMKAYLLSTSRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIADYLGKPLGDVNRKSKKTGKRIGKSRLLRRVHLIAQSKEAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKVIRIYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVSTIYNTAMQKAMDDELVELTSHMTEAMLANGKVLEENGIAIK
Ga0222712_1000382117	F006107	GGA	MNAVALRAEKAVADYLAAADWSTSGAGTPTCLTSYSRGLYDDPDLEDVMPNFPRVVVSTNSARPVQRVDLTNEVEVSVELQLSADDTDEAAVLTTVQVLDNRILPLFDDSGASALDAATNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATT
Ga0222712_1000382118	F018171	N/A	MANTQGSKYIFGSPATLALYDAAGALVVSGYVSPDMESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTINFVPANTTSVANAKLSAALPDVNGTCIISGAPVIEMGGYADAINADTGNRWIYAGGGSIKTTATGKATGTITLKRYTNITVTGAATSL
Ga0222712_100038212	F006262	N/A	MFTFTVAIKRSYLRAVYSTLGGVTLLAALAAKSVAASAVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLDDYDLAVYYLGQDGISSPTDTQIYNKMMAVVLVAATSYGGDFSNFRREGTIRTGMT
Ga0222712_100038215	F005633	AGG	MRIATTISVDKAGKSKIVAGPEVDAAAQRTDFNTAKIAEGSKLILWIQGSVAPKIRKG