Scaffold Ga0222712_10003589

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10003589
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16779
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (61.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F020907	Metagenome / Metatranscriptome	221	Y
F036207	Metagenome / Metatranscriptome	170	Y
F049575	Metagenome / Metatranscriptome	146	Y
F072285	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000358911	F020907	GAG	MIEKQLLNSLQGTMATIDPYSVKKEAIDEYRIDTIEERLTRIEDKVDLLITQLKIEFYKKNDGTSR
Ga0222712_100035892	F072285	AGGAG	MKYPQSVNKSIFIREVYEDTYENLNDYVVDTMIWENRVDELHTIWCKGKDPHMEEEWHLRNRHRGTLQTL
Ga0222712_1000358936	F000919	GGAG	MRFRNIEFRWSTYNKKHELVKWYKVEERNYCYVIALFDKDNEGYNMRTIGDRFFEDKDAWVVGKHAIEFLNAIFEIERIEEELK
Ga0222712_100035894	F049575	N/A	MTKLSAADLMVITDCLYRSLNVVGHSKWTKETRELTMEKVIVIMENMKAEVVCNDVEPIVVSGDDGV
Ga0222712_1000358952	F036207	N/A	MINFISGTIFGIIVATIGFTPVASALDGMMLNLQKTTVEMNAPKLPPPNF