NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10003589

Scaffold Ga0222712_10003589


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10003589 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16779
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (61.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F020907Metagenome / Metatranscriptome221Y
F036207Metagenome / Metatranscriptome170Y
F049575Metagenome / Metatranscriptome146Y
F072285Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000358911F020907GAGMIEKQLLNSLQGTMATIDPYSVKKEAIDEYRIDTIEERLTRIEDKVDLLITQLKIEFYKKNDGTSR
Ga0222712_100035892F072285AGGAGMKYPQSVNKSIFIREVYEDTYENLNDYVVDTMIWENRVDELHTIWCKGKDPHMEEEWHLRNRHRGTLQTL
Ga0222712_1000358936F000919GGAGMRFRNIEFRWSTYNKKHELVKWYKVEERNYCYVIALFDKDNEGYNMRTIGDRFFEDKDAWVVGKHAIEFLNAIFEIERIEEELK
Ga0222712_100035894F049575N/AMTKLSAADLMVITDCLYRSLNVVGHSKWTKETRELTMEKVIVIMENMKAEVVCNDVEPIVVSGDDGV
Ga0222712_1000358952F036207N/AMINFISGTIFGIIVATIGFTPVASALDGMMLNLQKTTVEMNAPKLPPPNF

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