NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10003510

Scaffold Ga0222712_10003510


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10003510 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17019
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002867Metagenome / Metatranscriptome524Y
F003805Metagenome / Metatranscriptome467Y
F004722Metagenome426Y
F043896Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000351011F004722N/AMSLPRTGRELVMEWLMREIRQAKTADLHRAAAFLEWARGIRKGCTKQRSSARAAQSNAWRKDVDDDVRWRV
Ga0222712_1000351015F043896GGAGMNNPELADWARQNWGQVIVDHSRMDLLEKLYEWDGRSNPEHPNHHTYTGLYEKYSQR
Ga0222712_1000351016F003805AGGMRPIEHTAESSFHKAATDKWLVDLFNRQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLADQFGLDRNSA
Ga0222712_1000351020F002867N/AMSVVNTTDFDNGYTLDQLENERGELYYRACLNSVCRYAEDHYIAMMYLEGMGWDPKADHQ

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