NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10003389

Scaffold Ga0222712_10003389


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10003389 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17403
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008077Metagenome / Metatranscriptome339Y
F008238Metagenome / Metatranscriptome336Y
F008617Metagenome / Metatranscriptome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000338912F008238GGAMSFKLNLSIFKSTKPESKVDFSGMMNVKVDELDAFCAFVMSQTPDQYGSVQVPISGWKKTSQKGLAYVSAVAQPPRDWVPPAPAAAQVTAAAQSLAAATDGVVVDIEPDLF
Ga0222712_1000338913F008077N/AMNFGEWMAVQLTPEQQFEIEKQARSLLNSPDAGTMAAALLKQACYQQQLLQQAVNEIARLECELMGRP
Ga0222712_1000338915F008617AGGMINRINNAICLLITAAVFAMIGIESGAHHSTTHSGTQQVVRHD

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