Scaffold Ga0222712_10002628

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10002628
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20323
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F019102	Metagenome	231	Y
F019290	Metagenome	230	Y
F025225	Metagenome	202	Y
F025739	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000262815	F005584	N/A	MSGTIDTTYFSTDLTYMIGDLWTSVTGLGSSAVSASVTDLGTAQELDIGGDVIRITQSLVVKASAISAPAIGSLCSVSGVERMIAGFSKSTDDISYTIELADITT
Ga0222712_1000262820	F006138	AGGAG	MPAVTIGTSGLVWGCTAEAIGLVQSFSEARNISKSEITNNVGEIVGISYYNPTTAYSLSVAVTGAISVTAGGALAALANAATVGTTRIDSLTINKSPDAFVTLDISATGYPNVS
Ga0222712_1000262821	F019290	N/A	MMEAFWGTTNIKVASAVATYGGKLRTTDPVTTQVYEDGRRQTTFWFQADGAGTMARDEMQCHWSEMKSDIESPIRYIRAALENRETLLGLVKNKVEPIRIIQRGNQTLLIPENAKPELKKAILKHL
Ga0222712_1000262822	F019102	N/A	MSISLEEELNSSFVSPEREFMGEKLSPYTEGSRLLLLQVRDDNDSSIYFIWAFIYMHIQIAKNRKDAIKLAWDKNLFREKIIEYIEGKNESDRDSATKIVSAMVDEAQKGRVEVIQTHGLPELGNA
Ga0222712_1000262824	F025225	N/A	MLTISLLNQAKFVHKLQQYQQVSRKNMADVINSKLGDVAVTAIGTTYRTNTAQIASELQRIETKTKIKKVFKPIGFDSKGRLKKRKIGQFLAKESKSVAYVGTYKLVNWLLKNRGLPTLGKTKLGLGGLGMGNKAGTIGALARRLVAGRKRSVNYIRNGWAAAASVFGKRAALTRGDYSKESIKRLGGGSKADSTKARMEGIIFNHAGDKDTKYYPVRKRQVSGAVKVGLPGLLEAIDKVMSDMAVYLARKNKEQSDKLGL
Ga0222712_1000262831	F025739	GGA	LELAGGGLKTEPRPEGKETMNKSLIGVLSVMRRWTLGFIAVSCIAGCATTQPYDLGQAPNQDSISDFIQRWDKLDRTHATQDQYRELYAQTLKALSRAMEDAERNKSRAEAQ