Scaffold Ga0222712_10002350

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10002350
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21762
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (38.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010681	Metagenome / Metatranscriptome	300	Y
F014004	Metagenome / Metatranscriptome	266	Y
F020890	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000235024	F020890	N/A	MDSFDDIQIEDFSSFDFVDEMNEGIFDEKDDDKSFNAFLNSNFDF
Ga0222712_1000235046	F010681	N/A	MKMRLTPKQQMWANIFKCAVERSNIYFKEKDLERHAREHTTVSLALQLGDQFWREIL
Ga0222712_100023507	F014004	N/A	MMKTLTLQVTEVSFDFDDEDFTVEEQQEVINSVVGNVFEVEVDDDDNDENIAQALVEEVTDTTGWCVFGLDFIHILK