NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10001172

Scaffold Ga0222712_10001172


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10001172 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33452
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (12.00%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021292Metagenome219N
F022633Metagenome213N
F033771Metagenome176N
F036299Metagenome170N
F043476Metagenome156N
F045056Metagenome153N
F063621Metagenome129N
F063808Metagenome129N
F067661Metagenome125Y
F067885Metagenome125N
F075872Metagenome118N
F077449Metagenome117N
F078327Metagenome116N
F090574Metagenome108N
F104709Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000117213F078327N/AMSNILLLLPSLLSMVYLMADFHHKWWWYLIFCSIPIIYLCILAHLKNTNELNEEDDTYTF
Ga0222712_1000117215F021292N/AMNHEIITHTPITMDNGNIVIAYIHKLPSGMYAMHADYPFQPNSNSTRTRQIVDALFRSQHRDWFRFIRFQRSSTPLPMPTFNPTNQ
Ga0222712_1000117217F036299GGAVTAGSLTELTLPDLCDSAGVVRRFALRDSAKTSVLSVANSGSGIVIRLRRDTVVERLILRDTTIVERTVVVQPKKRKSRWPILLVGAILGLVASVVLFARLR
Ga0222712_1000117220F022633N/AMIDFLKSIGINLGLTIAGFFGALLLAPKMKNWKMQLIAVLSGTLSATYIAPVIIGILNIKAPNIEYGLAFIVGFSGVKITEVLEVRIMKLLKSTPPNQ
Ga0222712_1000117221F067661N/AMPTFRKYAFPNEATFTALPVPQGFVVPLGIIDGTYCVDILWDGEPDPTYLPFECWPPPIGVHTFLGWDDQYGKDYTERDDVSNTLNED
Ga0222712_1000117224F077449N/AMSSWVTIKNDLIAFAESHLQINAVGFGDPLAIGTDNVINLRTTDRDRVIYPLLFVDAQSASMPMGATNLTVSVLVMDRVADLRGVDATISGSVVYRWTDNEDEVLSDTLRIMQDFVAEFTDDPDRDYTITGAVSATRFVEARDDKVAGWQATVVFELPFSRNVCQIPTS
Ga0222712_1000117235F063621N/AMSITVISPLPSLLPVGNSDVVVVSSNNTASANFRYVCDVSGSLSSARLKCDKLPTTNYGFFGVSKVVETLITPQVPQLTSGWQNGGYAVNANLTFREEFGTPPTVATGGTASASLIAWQAAFRQQDYAAFVPDNYQAGFGSANQITVSNRPTAYSMASGQHDFIGLILKSGSVPVAEIEYYDKTSLERTFTVSGSSNISNYFNLGPIGLYNLTDMQTSDGDDGTKNFPPVGSTYTVTLYNDDVAVDKDFTPTYTITIDNCQRYNDLRVFFRNMYGGIDSYTFTRMNRQRVDVDRKTYGYNASVYGDDVYDKQWSVTYRDTYTLNSDWLTDAEFTWLQEMIYSPECWIQLGTQLVPVVVKTDTYNVRKRVVDKLQQISVDVQVGYENTAL
Ga0222712_1000117236F045056N/AMKFTTEIEGDVLGVGSDVTKSVSLSASKDVNLAMVRWMSDVIKLTTEGIDSVDAKATLNLRQSVGFAELPVEAKVAQVAMEMATYWKFVEYGVNGVKENRGLPFTFKRIAPSLKHIEAIKKWIEDKPVALTDFDDTDADNSITQAAYKIAVTIKKRGIKPRPFLNPVLTDSKLDELVSSIAQVAGKEISLSMNV
Ga0222712_1000117238F033771N/AMSLLNKITVDQFQRIVSIEANSIYTASDKKIGVVAVIDNLPIEQVKKMTIAEVNKRYGEINAASKSLSSLAAKRHAKVAGKWYQFEWFIDEISAGQLVELYSYDMSSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYAAFFLQLSEPLLTITRRSLTEQGTTTTTAKA
Ga0222712_1000117243F063808N/AMEEKIGVLIEANDARAMEWQDRGALLTNLSNILDSISECDAPNAMHAKVAIVEKVIDIVNNIDA
Ga0222712_1000117245F067885N/AMQVLSVKHKLDGYYASQTMSLSPSEVAMLENVANANGYGRTNWWCGSCAVSRLQEMMADAMDSRARLSVE
Ga0222712_1000117247F104709N/AVEARTIILTLYTSGKLRQIARQLATPDLAPDLEHELVIRLYEKPADKIEAMHAGGYLNFYIVRMAINLYRSRNSKFQRDFRHNELREEIADQQLEAADEPYDARPDAIFNRALEVMDGWAKAGAYPYDKQLFLLWLELGNKKLIERHTKIPWRSISYTINNCKQRLKHELGSDYYLAFGHYDFLGDEPL
Ga0222712_100011725F075872GGAGGMSIERKFSQHYDIPHAGGRIDIEVHIEYESTNWTEDSTGDIDILDAYLSSFKYIKQDMTPTEVKVGEIPPVLFEWKKAVMSDAEAESAQAWLDQTPLDFFYDTAFENECEEWNAPPLFLQ
Ga0222712_100011727F090574N/AMTQFERDEAMMSLIHHNMQLGKIVTLVGQLFQNVSPEVSARLYPVWAEAYRSALQDLQNAYNLGVTEERTKCVAMMSKLNQTDL
Ga0222712_100011728F043476AGGAGGMLTLPTNIDKAEIEAFVNHVTAEVMDGHVDPLSVHIRCKAVVKALEAIIELTEEVAKDSAATYGKGEFKFHGASVQLREPRDMPDFNHDPVCVELADRLKARHELVKTAFKMADTAAIVDPNTGEVVPVVPVKPAKTTLTVTFR

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