Scaffold Ga0222712_10001172

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10001172
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33452
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.00%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021292	Metagenome	219	N
F022633	Metagenome	213	N
F033771	Metagenome	176	N
F036299	Metagenome	170	N
F043476	Metagenome	156	N
F045056	Metagenome	153	N
F063621	Metagenome	129	N
F063808	Metagenome	129	N
F067661	Metagenome	125	Y
F067885	Metagenome	125	N
F075872	Metagenome	118	N
F077449	Metagenome	117	N
F078327	Metagenome	116	N
F090574	Metagenome	108	N
F104709	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000117213	F078327	N/A	MSNILLLLPSLLSMVYLMADFHHKWWWYLIFCSIPIIYLCILAHLKNTNELNEEDDTYTF
Ga0222712_1000117215	F021292	N/A	MNHEIITHTPITMDNGNIVIAYIHKLPSGMYAMHADYPFQPNSNSTRTRQIVDALFRSQHRDWFRFIRFQRSSTPLPMPTFNPTNQ
Ga0222712_1000117217	F036299	GGA	VTAGSLTELTLPDLCDSAGVVRRFALRDSAKTSVLSVANSGSGIVIRLRRDTVVERLILRDTTIVERTVVVQPKKRKSRWPILLVGAILGLVASVVLFARLR
Ga0222712_1000117220	F022633	N/A	MIDFLKSIGINLGLTIAGFFGALLLAPKMKNWKMQLIAVLSGTLSATYIAPVIIGILNIKAPNIEYGLAFIVGFSGVKITEVLEVRIMKLLKSTPPNQ
Ga0222712_1000117221	F067661	N/A	MPTFRKYAFPNEATFTALPVPQGFVVPLGIIDGTYCVDILWDGEPDPTYLPFECWPPPIGVHTFLGWDDQYGKDYTERDDVSNTLNED
Ga0222712_1000117224	F077449	N/A	MSSWVTIKNDLIAFAESHLQINAVGFGDPLAIGTDNVINLRTTDRDRVIYPLLFVDAQSASMPMGATNLTVSVLVMDRVADLRGVDATISGSVVYRWTDNEDEVLSDTLRIMQDFVAEFTDDPDRDYTITGAVSATRFVEARDDKVAGWQATVVFELPFSRNVCQIPTS
Ga0222712_1000117235	F063621	N/A	MSITVISPLPSLLPVGNSDVVVVSSNNTASANFRYVCDVSGSLSSARLKCDKLPTTNYGFFGVSKVVETLITPQVPQLTSGWQNGGYAVNANLTFREEFGTPPTVATGGTASASLIAWQAAFRQQDYAAFVPDNYQAGFGSANQITVSNRPTAYSMASGQHDFIGLILKSGSVPVAEIEYYDKTSLERTFTVSGSSNISNYFNLGPIGLYNLTDMQTSDGDDGTKNFPPVGSTYTVTLYNDDVAVDKDFTPTYTITIDNCQRYNDLRVFFRNMYGGIDSYTFTRMNRQRVDVDRKTYGYNASVYGDDVYDKQWSVTYRDTYTLNSDWLTDAEFTWLQEMIYSPECWIQLGTQLVPVVVKTDTYNVRKRVVDKLQQISVDVQVGYENTAL
Ga0222712_1000117236	F045056	N/A	MKFTTEIEGDVLGVGSDVTKSVSLSASKDVNLAMVRWMSDVIKLTTEGIDSVDAKATLNLRQSVGFAELPVEAKVAQVAMEMATYWKFVEYGVNGVKENRGLPFTFKRIAPSLKHIEAIKKWIEDKPVALTDFDDTDADNSITQAAYKIAVTIKKRGIKPRPFLNPVLTDSKLDELVSSIAQVAGKEISLSMNV
Ga0222712_1000117238	F033771	N/A	MSLLNKITVDQFQRIVSIEANSIYTASDKKIGVVAVIDNLPIEQVKKMTIAEVNKRYGEINAASKSLSSLAAKRHAKVAGKWYQFEWFIDEISAGQLVELYSYDMSSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYAAFFLQLSEPLLTITRRSLTEQGTTTTTAKA
Ga0222712_1000117243	F063808	N/A	MEEKIGVLIEANDARAMEWQDRGALLTNLSNILDSISECDAPNAMHAKVAIVEKVIDIVNNIDA
Ga0222712_1000117245	F067885	N/A	MQVLSVKHKLDGYYASQTMSLSPSEVAMLENVANANGYGRTNWWCGSCAVSRLQEMMADAMDSRARLSVE
Ga0222712_1000117247	F104709	N/A	VEARTIILTLYTSGKLRQIARQLATPDLAPDLEHELVIRLYEKPADKIEAMHAGGYLNFYIVRMAINLYRSRNSKFQRDFRHNELREEIADQQLEAADEPYDARPDAIFNRALEVMDGWAKAGAYPYDKQLFLLWLELGNKKLIERHTKIPWRSISYTINNCKQRLKHELGSDYYLAFGHYDFLGDEPL
Ga0222712_100011725	F075872	GGAGG	MSIERKFSQHYDIPHAGGRIDIEVHIEYESTNWTEDSTGDIDILDAYLSSFKYIKQDMTPTEVKVGEIPPVLFEWKKAVMSDAEAESAQAWLDQTPLDFFYDTAFENECEEWNAPPLFLQ
Ga0222712_100011727	F090574	N/A	MTQFERDEAMMSLIHHNMQLGKIVTLVGQLFQNVSPEVSARLYPVWAEAYRSALQDLQNAYNLGVTEERTKCVAMMSKLNQTDL
Ga0222712_100011728	F043476	AGGAGG	MLTLPTNIDKAEIEAFVNHVTAEVMDGHVDPLSVHIRCKAVVKALEAIIELTEEVAKDSAATYGKGEFKFHGASVQLREPRDMPDFNHDPVCVELADRLKARHELVKTAFKMADTAAIVDPNTGEVVPVVPVKPAKTTLTVTFR