NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10000873

Scaffold Ga0222712_10000873


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10000873 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38684
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (80.70%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002764Metagenome531Y
F043291Metagenome156N
F066598Metagenome / Metatranscriptome126Y
F071155Metagenome / Metatranscriptome122Y
F083939Metagenome / Metatranscriptome112N
F095171Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000087315F002764GAGGLSPEDEAFEELSRRQGDWGLQGSRKHQIIRYAENNARNVVIEEVAQHIEKCTLAFGKDTIQSFTAYVRNMKK
Ga0222712_1000087319F083939GGAGMDADYIINSVKQTSETLYREHDADQVERLLYRIQMLEGHIRVLVNHIDNARDEIKTLQTELISKDSK
Ga0222712_1000087320F095171GAGGMLNRTKFPRTFTEAFPNSLENGACIEIHVAQLTIADKIVRVVSLIALIVLALDCFIWRP
Ga0222712_1000087321F043291AGGAMKNLTYTTEVHSIDYGYLMVEFDYFEADDSVGLSEVYDWFAYTVEAFEDEPAGTEVTYELTAADQALIYSQIKKHHIAMIEDFHA
Ga0222712_1000087327F071155GAGMRHDIDWTKVHCKVGQRVPVYPFKKEPFIGEVKRIKMNRFGRVSYVIDDKEVMAEELLPAKNQTKLKMRAL
Ga0222712_100008738F066598GGAMGFLVALIAMVIVFALMLPLIGSIYYDTLATQKESKMQIERMERLRQQLEQDRKDLDRMKNESK
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