NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10404147

Scaffold Ga0222713_10404147


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10404147 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)840
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010232Metagenome / Metatranscriptome306Y
F010612Metagenome301Y
F056557Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_104041472F056557AGGAGMYLDTGTMIGIMIALIASILTIGYSIYIIKTQNEIIQRMSNATATRRKMER
Ga0222713_104041473F010232AGGMRSKEELLKIKEAFAYAMIDMLDVYDELIGNTPRKLWVQPEPTVNDLVKNEEESNA
Ga0222713_104041474F010612GAGGMLEEDTPQWEHTVWIMAKVRCRTTHINVDNAGDEALDDPSEWYVLEFDKGIKHSQ

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