Scaffold Ga0222713_10256764

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10256764
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1135
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F002060	Metagenome / Metatranscriptome	597	Y
F011938	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_102567641	F002060	N/A	MNMDYTSIVIAISAAVLSGMGTAIIAGLKENKREKVRQYERNQDHLKLEVKDLKIELYKIERELTEWKDKYYNAIQELIGVKAELEETLLKLSFIDHHIEDIHGLDREF
Ga0222713_102567643	F011938	GGAGG	VKEYYDVTHIVYIHGEDSHGTVEKLGAYASVVKYTKDGLECSELMENDEFTIVDEIVFKHIEESN
Ga0222713_102567644	F000473	AGAAG	MFIDKDKDHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKKPSMLLMDVVMYPDFLALRLYEDNFLQFDGIKKEMVIDYVTKIKRLLESYGVRCELEGRPSERVL