Scaffold Ga0222713_10246027

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10246027
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1168
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004005	Metagenome	457	Y
F004450	Metagenome	437	Y
F039482	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_102460271	F004005	N/A	MYGVADIAEYIHQVKQSITYKFSGGNMVVAGLMSDAQELMLYNDVERARQTLNIAKAILFAITEGELVGTVERK
Ga0222713_102460273	F004450	N/A	MNWLAAVLIALVMSAAYLLDGPSEHDARVDTAEEKIQKLCGENAGWKLLDDGSVQCFTHRGFKTKKVQL
Ga0222713_102460274	F039482	AGAAGG	MSDKLELTEHAVYILNGIKLLPHYTLPVYVTPGHTKDTPMKLWTVEELKDAGAVQSSAFLWPRHTLAAGGWHG