Scaffold Ga0222713_10139753

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10139753
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1685
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F006986	Metagenome	360	Y
F020354	Metagenome	224	Y
F021759	Metagenome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_101397531	F006986	N/A	VTAVLVIWHDAHSGSESWINIKDLDTEPAEVKSVGFMLAPADGGKPDHITLYQSRNEDSLDHVLHIPVGMVKSIELLMGLE
Ga0222713_101397532	F021759	AGAAG	MDAGLAVVFAAVVASLGGIAVAILQMRNLTQENRTDHAMVQKRLDTVIDMVGKTSAKLTGHLDWHVIKEPSKDQKVKQVATRKKK
Ga0222713_101397534	F003378	AGGAG	MDQGMTIRRNGGMAKFFDLGQRLLSLFLSTALPAVTTGAVIGVSVAKSATMAGAMAVISVVQKLAAASVDGSLTSEEIKDSFGTPSKKKK
Ga0222713_101397535	F020354	GAG	MFGKLRDELFALGFTLGASAITIMTLSGSVQNWALIFTFLSLALHLAGVLTKGEEDGSGHDD