Basic Information | |
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Taxon OID | 3300021962 Open in IMG/M |
Scaffold ID | Ga0222713_10072446 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2541 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.06 | Long. (o) | -121.8 | Alt. (m) | Depth (m) | 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002333 | Metagenome | 569 | Y |
F045692 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222713_100724461 | F045692 | N/A | MAHITQTKLEDLNIIKLYEHYGALERSLPLLTPESQELAKAELECCANLRSEKIDRIYYALAAHEDALER |
Ga0222713_100724465 | F002333 | N/A | MSIQVQTELSSAQALIYSRSNIRRAYPDFDDTAIAGIYLRGDHCIVVRHDGTEQSYDRALIKARFQTYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHALGHLTSNAQLQNHWADKFIHVSDPAKVRTLLQSDQTDLGYLVAPDGLRLSDRPLDMDGELDDIQEQQSSFGEPSCSCGSFQRQLNNLSAFQEEIQGFKPWCIHLTWFNKYRELLCKRTDVRNASPSGTPDKCVAWWYAPPADHISDGRFVLLHTKSGAQAPLTHWRTYKPKEIFTQHDAWDLFFNMMEAGYAPFPGTSLPQLKAAVKKQ |
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