NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10072446

Scaffold Ga0222713_10072446


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10072446 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2541
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F045692Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100724461F045692N/AMAHITQTKLEDLNIIKLYEHYGALERSLPLLTPESQELAKAELECCANLRSEKIDRIYYALAAHEDALER
Ga0222713_100724465F002333N/AMSIQVQTELSSAQALIYSRSNIRRAYPDFDDTAIAGIYLRGDHCIVVRHDGTEQSYDRALIKARFQTYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYSHALGHLTSNAQLQNHWADKFIHVSDPAKVRTLLQSDQTDLGYLVAPDGLRLSDRPLDMDGELDDIQEQQSSFGEPSCSCGSFQRQLNNLSAFQEEIQGFKPWCIHLTWFNKYRELLCKRTDVRNASPSGTPDKCVAWWYAPPADHISDGRFVLLHTKSGAQAPLTHWRTYKPKEIFTQHDAWDLFFNMMEAGYAPFPGTSLPQLKAAVKKQ

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