NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10056985

Scaffold Ga0222713_10056985


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10056985 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2955
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F003582Metagenome / Metatranscriptome478Y
F006346Metagenome / Metatranscriptome375Y
F012975Metagenome / Metatranscriptome275Y
F074876Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100569851F000671GAGGMEKILCYSCNKSKNKLNVRKSTLLPINLLMCETCITSRIEPRWVVILAGRSMGPEHVREFVLKKRYIGNDIAASE
Ga0222713_1005698510F006346N/AAQLQNKEMDAKNTQADKKLEAEIDAVAARLAAKPDGQMPEAQPVDTDWDKED
Ga0222713_100569852F074876GAGVYLHSLGVYGTIEKMGAYASVVKYTKDNIDYQELIENDEFAIVDEIVFEHAEEEK
Ga0222713_100569853F000473AGGAGMASSMYDQNHFKYGINQFTGEPNKPVFYNQTMAKKIKEIKAPVMGLQMDIARYPDFLAIKLYEDNFIQYQGVQKEMVIDYVGKVKKVIESFGVRCELVGVPSERVL
Ga0222713_100569855F012975AGGAVLNLTLKGVEVFIEKSKAKNQEFYWDNYDLMIWKKDQSGFTNIKGLFRKDTWGVAERISANNEGIWKLPAKYVKHFK
Ga0222713_100569858F003582N/AMNTYRVKIEIDAEVEAFSSEDAVDYANDIFGIDDEVKNVKVISVKEK
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Institute for Fundamental Biomedical Research
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