NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10052234

Scaffold Ga0222713_10052234


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10052234 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3115
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F009057Metagenome / Metatranscriptome323Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100522342F009057N/AMPTFRKFAFPSQKVADQLLASMQPLDTAVPLGNIDGLECYDVLFQDGCPKELTSYIVWPTPCGVHSFLGWDEQYAADYQEFATPLK
Ga0222713_100522345F001129N/AMLGQGGTMQFIDAAVSGANFDFIVVNIASGFSTLTGTGGENLLTAYSLTSKTVSAGIVISGRNGGKITAVTPTGGGSVIGYTFL
Ga0222713_100522346F000847N/AMSWIKIKQALLTLANSHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGSLSLVVGVYFSDRVESIASMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPSQEWTLSTSVSLTRFVESRDDRTAGWVATLQFQIPYSHSVCEIPT
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