Scaffold Ga0222713_10029873

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10029873
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4408
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007310	Metagenome	353	Y
F010398	Metagenome	304	Y
F076074	Metagenome	118	N
F095475	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1002987310	F007310	N/A	MKQVYWNSTEQWNNHHHYETLIEDLTGFNLQKDLCAETVKYMAKCLKDTPYQRRFKSLYTIYENEYKVLVDKFNSVAENNGMIGIK
Ga0222713_100298733	F095475	GGAG	MKNKYGKQCCYCACFVQAGEGRCWRWDETNRWYVSCEDCFQEKKEERKNK
Ga0222713_100298734	F076074	AGGTGG	MSDYNGWKNETTWTVNILFMETIQQLVKDGYKLDEVATHIYRKLGVENMNWHGSQIFASAWKQIDWWTLYARAEENIKEVVR
Ga0222713_100298738	F010398	AGGAG	MEIAIEGVVEVNYHLVIDEDVFNECCEEAGLDPANFKKFTKAEWDELNPHLIQAVVDNEADIDYTEIHEESTVYADTLTIDDSDKMTTVYYNQNRKVDTVDIQ