Scaffold Ga0222713_10023373

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10023373
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5132
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034177	Metagenome / Metatranscriptome	175	Y
F034854	Metagenome / Metatranscriptome	173	Y
F078411	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1002337314	F034177	N/A	MSVQEQIDKIKERLEFLKTDRTVWTSAFAGPKGYTPYNHGPYFRKLERKRLNAKLKRLMKQI
Ga0222713_1002337316	F034854	N/A	MTVQELIDQLTELKEQGHGNMELVLSVTDHTDWEYNLDFPGFDIGNVFDDDFDDLTDYGVCEVSI
Ga0222713_100233735	F078411	AGG	MTDLSKHTDEVLERIQAHQILEILATANQSIDKALAQIQELEYNSMMFLDLRSTREIMDDINAIHLHLHFLQSAKNFAKQEIKEIGFYLN