Scaffold Ga0222713_10017980

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10017980
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6026
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033780	Metagenome	176	Y
F045719	Metagenome / Metatranscriptome	152	Y
F078657	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1001798011	F033780	N/A	MTPCPWSLVAIHWIDAFDSSNGWISTRDYKAKPQHVVSVGWLWPDLLEGYLSVTCSWCPEEEPEMETVGMVTHIPLGMVQKVVMLGTPQFDT
Ga0222713_100179804	F045719	AGGAG	MSATWYKLKDETWGVKIRHDGKAGEQVEVTNKKGETKTVFLGNRVAKFDDAQLWSVSDEQPQTFTRPPTLDEEPF
Ga0222713_100179805	F078657	AGGAG	MSDNQSIFYDAWISDLQRDLDALREDKRELLRKVAQLEHLVAEYGNKINNLIHNRGDE