NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10017980

Scaffold Ga0222713_10017980


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10017980 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6026
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033780Metagenome176Y
F045719Metagenome / Metatranscriptome152Y
F078657Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1001798011F033780N/AMTPCPWSLVAIHWIDAFDSSNGWISTRDYKAKPQHVVSVGWLWPDLLEGYLSVTCSWCPEEEPEMETVGMVTHIPLGMVQKVVMLGTPQFDT
Ga0222713_100179804F045719AGGAGMSATWYKLKDETWGVKIRHDGKAGEQVEVTNKKGETKTVFLGNRVAKFDDAQLWSVSDEQPQTFTRPPTLDEEPF
Ga0222713_100179805F078657AGGAGMSDNQSIFYDAWISDLQRDLDALREDKRELLRKVAQLEHLVAEYGNKINNLIHNRGDE

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