Scaffold Ga0222713_10017566

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10017566
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6110
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F029411	Metagenome / Metatranscriptome	188	Y
F040616	Metagenome / Metatranscriptome	161	N
F097200	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1001756613	F097200	N/A	MTSQLASEKKLQGHNREQLFKTLYEANHLGCVVEVIKSRRKPDVCIKRNGVVVHNISVKSADKVIQWELKSYNKLLSLYGNDHLIMEFMNIRTKNDKPTQKQLFVDYFPRITAYLSDKQNFKQFITKHFTNNNEVDLLAVGNGISYNIYNFQQVLDYMTDNYVVRNSEQQVQINTTDGYLMFSIEIRSDKQCMLIRQDLASLQRVLKHITPVDKLPPVX
Ga0222713_100175662	F029411	N/A	MNVDFSTIDPQNELSDLYTPDYREQAPNEDGYLDQSYEDRFECACMEDYQ
Ga0222713_100175663	F005293	N/A	MNVDSVPFIPTRDDLIGYISDTYKEINGFRPRPIWSELTYNQLDQWGQRLSAEVVTYRKQEVIRNRIARGLRRAQQRAWVEKKRSYFTPSTFTLGNIVNF
Ga0222713_100175666	F040616	N/A	MIDPEDIAYEDRISGDADSYTGNGSGEDDLADYNQNEASDYCNE