Scaffold Ga0222713_10015802

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10015802
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6521
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019433	Metagenome	229	Y
F023522	Metagenome	209	Y
F048947	Metagenome	147	Y
F054559	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1001580210	F019433	N/A	MVMAKTKVASLNELLATRARAVFPYRVNFNNITRNQIEEMASWCINNCRGLWREEHYHALYFQFEDDYDAMMFMLKFGGRGNV
Ga0222713_100158023	F054559	GAG	MKIGFSFGRCVRDIVNGEVAYDDVAWIISGTALRDEENVKFCIQDYMYRHDYLEGLDEEKCMEVGMRLFNEGKVFQPRLQSIRAFRIPEGAIWADMFPTNMANNHAAKTAWEAYRFMLHMTAQVPEDVKENWKG
Ga0222713_100158025	F048947	N/A	MEMNSSQRRRGRREFRKLEHSILIDSKTHRDASEWCLENFGKRWEAVYGTDGTWTMFWAGPNYHNKYIFHFVNEQDKLMFILKWA
Ga0222713_100158028	F023522	GGA	MVHDPNPTTTILRAQRAEEHLKVDDKLMALLGTYHAIVFQDDDFAEKLTWCLENCQNKFRDLAHPNGRAWYFQNEQDATMFAMKWA