Scaffold Ga0222713

Basic Information
Taxon OID	3300021962 Open in IMG/M
Scaffold ID	Ga0222713_10015019 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021962 Open in IMG/M

Scaffold ID

Ga0222713_10015019 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6724
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6724

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.06	Long. (^o)	-121.8	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.06

Long. (^o)

-121.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F003543	Metagenome / Metatranscriptome	480	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_100150191	F003543	GGA	MADETISTRIVANADFSALIADVHKVTASLSKLQEQLANSNKMLANQIAVMNRSFSDTLRSTGQFSTHFVSLQSDVEKFGKNLDGGKLKLNQYFNTFRQHAQGTGGLIRDLAKQQVALQNAVLQPLGRNAQGLMQFNVHVPRGLDEVKNKTAIARQELQIMNKVIQDGAGQLINWGK
Ga0222713_100150192	F005479	N/A	MPELINTFQALKKKEHDLKKFQASLKGVDIGEYQEDKKEASSFEDIQLRAAGINANSNDVVSLQGRFAAQAGFGIGEGLGYSKE
Ga0222713_100150195	F000258	GGAGG	MTANYKLDAMLELRKYLWDQLSSRNIFDQDDYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKVGMSYEDNWLICCEQIMLTLYSTSVSDINEIRNYLTDEFRRMDESARDINKWAELSDKFKFHTIWIADISPTAPSEELQGFFAAEVILEIKYSRITDGQGRFL
Ga0222713_100150198	F005054	AGG	MAEILIRTQSPITHQIFWNGDVTVPDTTPIVKLYDVTNDPAISPAINPTHLLTILTSVPDENNPGAYAVNIPYQYTDRNKTLRLQWEYMIGSTNVIRMDEVYVVTPYVDFNHVQDLGFSIDSSDPNYKSYKELVRAERYARKQIEQHTGQSFYLYDDLYVVYGYDSDILPLPAKINTLHELYARDILLLDTINEIDNWNYPVEVSETGYGIKINRAGMLDNTVYTANGMVPPSIHDYASGVFQSGVPYKVQGRFGWEKVPDDVELAAIELMKDYFTKDSVWRNKYIKKISTFDWDFEYTGEAHTGTGNAYADKLLADYVLTTKVEII

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222713_10015019

Overview

Ecosystem & Geography

Associated Families

Sequences