NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10011605

Scaffold Ga0222713_10011605


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10011605 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7861
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000766Metagenome / Metatranscriptome899Y
F015719Metagenome / Metatranscriptome252Y
F022871Metagenome212Y
F046331Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1001160510F022871AGGAGMSELENVWDNDEEFWDFVGENRRMVGLSVSDNQGLDILNALRDIYLTIEKEPDSAMRMLTLLGTVIYASSIGEGKQFTDEIQVAAAMEQFDTNIKDILDEESR
Ga0222713_1001160519F000766N/AVLETIDKDGTEYDHITYEAGVTAVEVGTNNPDTAQEYVGYKFVFNRDATTTSQGPIFKGYQAKATIATPRQRVMRFPVYCFDIETDRYNVVSGYEGKALTRLQLLENVEENGDVVTWQDLTTGESRQVVIEQISFTRMTPPDKRFDGFGGIIEITIRTV
Ga0222713_100116053F015719AGGAGMTMYYTEVDGTEPTISIQVKDTKYTFTNDSLVRLIEEKENLRTELVQVERKLKSTQFDVKEFFQSRYETDQSEILCEVDDVNSLLKDIGSDELTKSWSATVTITATVTGVEAPNAEAAREIIEDAFEINLTVDGDVWVDDLTVESCYPEA
Ga0222713_100116055F046331AGGAGMSHSEAPISITIKTAAGSLVTVRASDGTELDSIVAQGLDAITSATTELEKAIRGTIPTPMTVGQVASALGASISPIDNSTTTLGGRNCPHGKMTAIQGTGKDGSMYRGYFCPAPKGAFDKCKNVYLKTTDAAWNTFVPEQVK
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