NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222713_10010666

Scaffold Ga0222713_10010666


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10010666 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8239
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002333Metagenome569Y
F029716Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1001066610F029716GGALHPSIQESFYLKIPAPTDVDDARIKMSCHDHALKDFDLQLEMNDLQTDMLKDNNEVIPYHGDEHDDLEAKRLKLLFGKRFHQNASNAYWYWLQKEKPCSNKVN
Ga0222713_100106666F002333N/AMTTTATHDEFNSSPQATHTELNAAQATIYTRTNISRAFPDFDDSGVVGIYLRGDSCLVVYRDGTERLYPKDAIKTAFISYTHRLKDFFSYLGPNYRGPSIWHDNSYILFKGWNYSHTLGHLNDNAKLQSQWADKFIRLTDPTKLKALLQSEHTDLGHLVAPDGLRLPDRLPDLDSELETMQEERPMFGEPNCSCGSFQRQLNNLPLFQQEIEGFKPHCIHLTWIAKYRSLLSKRTEARDACPAGVPHTCVAWWYQPPMDHASDGRFLLLHTKSGVQAPLSHWRTYKPKESFTQRHAWDLFFSMLDAGYVPFPGTSLPQLRMAFKHD
Ga0222713_100106669F001018N/AMAQITSTKLKELSVIKLYEHYAALEKSLPLLTAESQDLAKAELESCIDLRSEKVDRIYYAMAAHEDALERIKKEGDLVATAKLHHTSQLKSLKGLLSYLRRVLPLDTNKITGRNYQFTLIKKKELTVEINSDPELWNIDEKSTYCMEEETTTTKRVVLRSFSGEVLSDRTEPKTTTKVLPNLDVIRCAYQNGQQLPTGVKVVQDYSVRSKRIFNEPRMELVASEYPRELLPEDSSAD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.