NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10009045

Scaffold Ga0222713_10009045


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10009045 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9113
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F002622Metagenome / Metatranscriptome542Y
F018177Metagenome / Metatranscriptome236Y
F033808Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1000904511F000369N/AMSEIELSDRFDRMNRVVEELLKGSTPTQIATITGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKESWKTVEDADQAGQLAVKSGALKLIADIEAKRIGMLQSIGVLENNEIASQIAETERKQDILVKILKEVTSTCPKCKMDVAKRLSQITGVIESVPVEEADVV
Ga0222713_1000904517F033808GAGGMEMFLIAGIAIGFLIGYPLGLFIDKLDKREKAKDGGR
Ga0222713_1000904521F018177GAGGMPDINEFLGKPEKLFKPELERMGGTKPCSKCDKNVEEFFWDALNMIMLWECPDGHKNSVQVG
Ga0222713_100090457F002622AGGAGMNEDEENDARLAYYLEIGAVSFEGLDENGEIIYSISENAKEIAPELWQSHMEYVDRSIMDLYEKGLAEIEYNEDLEATVHLTPEGYKLAREMGLVEMDLNTDIPND
Ga0222713_100090459F000376AGGAMSTYQEKAKECKCCGKHVPLPTVLKEYNGIVLCPTTFSNVIEYKRIWKTSGVRPMGNIRKHFSEYVQQIVEETIDKNEDGTL
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