NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10004451

Scaffold Ga0222713_10004451


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10004451 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14055
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002764Metagenome531Y
F011742Metagenome287N
F020138Metagenome225Y
F040522Metagenome161N
F044970Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100044511F044970N/AAIEQKTKALESKCLNKNYAGFTADIQAIQSQLTLLTMWITQAQGEQIRENTYRILNKV
Ga0222713_1000445120F040522N/AMANGCVAAIRKGCELYKEVKGTVAAAQKTVKEVTAIAEEVGGFFGFFKKKKPKPTATPVAPKAKKAEAEIWDEGRVVADLAANLSQFFRVQQQLADHIREEEEKSKTVYDPNQNIMEAALNRELAKTQFEKLAKEIREIMVYQSPPELGNLYTRVNQMRVLIIAEQEEARLAQEKKQREVEWQRRRVISAIQDKAIYGVACLVFVLYLVLFFSLLIMDRKVRWGF
Ga0222713_100044516F020138AGGMNQQQTTRLNAFWQDVEAHKALNPSSPENALVILKSVALDALLAAQDIEQIGVNDANN
Ga0222713_100044517F011742AGGAGMQTIEFVPFDWVDDDFNPEIDRIEVDYQWHEGDDSVGLISYCEKTVKWMRFNLQIKDITDELSYADLAYLKHEIKRNDQEIADERT
Ga0222713_100044518F002764AGGAGMKEPEDEAFDELAKRQGDWGLQGSRKHQIIRYAENNARNEVIEEVAQHIEKCTLAFGKDTIQSFTAYVRNMKK
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