Scaffold Ga0222713

Basic Information
Taxon OID	3300021962 Open in IMG/M
Scaffold ID	Ga0222713_10001184 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021962 Open in IMG/M

Scaffold ID

Ga0222713_10001184 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29719
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (15.15%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

29719

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (15.15%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.06	Long. (^o)	-121.8	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.06

Long. (^o)

-121.8

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004155	Metagenome	450	Y
F006588	Metagenome / Metatranscriptome	369	Y
F011225	Metagenome / Metatranscriptome	293	Y
F080053	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1000118412	F004155	N/A	MDSKLLVGLIKEVVKNEVKQQVKEELAKLIKSGAVTLNSQRKTTTPSLREMTEVNTTTPLRKQTVVQTQQKPQIKKEFSKDPMINEILNMTQPFTSEQRKEGANAVSSVLDMIKPELRVDESEWETMDFRDANVPAGTPTFESTGDGLQDATIKALTRDYSELVKRFK
Ga0222713_100011842	F006588	N/A	MSKILELYKAAQSSLGVDKISFEAGTNAKTPYTTNDLKKADEQVLTAAKFKTGRGGEVSEKKYSDSLKK
Ga0222713_1000118425	F011225	GAG	MLLESLDGKLRILQNGITGAQHMSPSEAHTTLEDARKIVERVAELTRINR
Ga0222713_100011848	F080053	N/A	MTGLEAIAQKLEEKRKSDLESILSISGSQAIAKNEYGVTIVNENNVASSLVFKELTKPKYDEVELAKAIDLNIKELKPDIPKPNLDLVPKSLYTEEVLQNEDLRKQVADLTSEVTTLNSTISDLESEVQTEINNRLSIEQSNDALVNQLNTLTQTVDDFALQIQNSLQKSVEEGILRASLQSQNTGFKAQIQALIKQIDSLNSIIEGLQSQLGAVQNQQAIVQGTQAQAQAAGADVVNDVAIVKLNPQEDANALKIWARFSANGDSQWKNGKSISITNNDRQPITVTLTAKNPKDREFYKIPQKSFSIEAGQSKDMEFTLNHNAVGDLDSRKKGGLFNGKTHSAEYKDGSLKVVVTRSDGTSKDKTYEAGFGKYHPDSY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222713_10001184

Overview

Ecosystem & Geography

Associated Families

Sequences