NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10001184

Scaffold Ga0222713_10001184


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10001184 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29719
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (15.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004155Metagenome450Y
F006588Metagenome / Metatranscriptome369Y
F011225Metagenome / Metatranscriptome293Y
F080053Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1000118412F004155N/AMDSKLLVGLIKEVVKNEVKQQVKEELAKLIKSGAVTLNSQRKTTTPSLREMTEVNTTTPLRKQTVVQTQQKPQIKKEFSKDPMINEILNMTQPFTSEQRKEGANAVSSVLDMIKPELRVDESEWETMDFRDANVPAGTPTFESTGDGLQDATIKALTRDYSELVKRFK
Ga0222713_100011842F006588N/AMSKILELYKAAQSSLGVDKISFEAGTNAKTPYTTNDLKKADEQVLTAAKFKTGRGGEVSEKKYSDSLKK
Ga0222713_1000118425F011225GAGMLLESLDGKLRILQNGITGAQHMSPSEAHTTLEDARKIVERVAELTRINR
Ga0222713_100011848F080053N/AMTGLEAIAQKLEEKRKSDLESILSISGSQAIAKNEYGVTIVNENNVASSLVFKELTKPKYDEVELAKAIDLNIKELKPDIPKPNLDLVPKSLYTEEVLQNEDLRKQVADLTSEVTTLNSTISDLESEVQTEINNRLSIEQSNDALVNQLNTLTQTVDDFALQIQNSLQKSVEEGILRASLQSQNTGFKAQIQALIKQIDSLNSIIEGLQSQLGAVQNQQAIVQGTQAQAQAAGADVVNDVAIVKLNPQEDANALKIWARFSANGDSQWKNGKSISITNNDRQPITVTLTAKNPKDREFYKIPQKSFSIEAGQSKDMEFTLNHNAVGDLDSRKKGGLFNGKTHSAEYKDGSLKVVVTRSDGTSKDKTYEAGFGKYHPDSY

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