NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10000627

Scaffold Ga0222713_10000627


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10000627 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39846
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (29.51%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014847Metagenome / Metatranscriptome259Y
F017288Metagenome / Metatranscriptome241Y
F028095Metagenome192Y
F041152Metagenome / Metatranscriptome160N
F045700Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1000062710F041152N/AMNIVDYIVNNWDNLPKSKFDDVTVVIFKEIENWDGGYGHHSYEGVGVDKDGNVTWCYSSGCSCEGGPSTDIKKDLKVFTVTDGIDLNVDPSTIDFNSLEVVFNSY
Ga0222713_1000062728F017288AGGAMADNKTPYELRWDILKEMISVTQNEWFTKKEIAERNAEKSGKQLEYIGDFPLHDAVQRAENVYTQFICKK
Ga0222713_1000062731F014847AGGAGMELVEHQLLDNIKTLHEQNAKLQQEVDRLKQTVETLTETNKELNRKLKSIQALFL
Ga0222713_1000062740F028095N/AMIGSHYMPEQIYMKLQDKVIRPRLTKENINRNNKSFKHLVDQYQRWNEQDSLGRGDKEPRATYEEDIIKCLFEYDLDGYHLAEFLKEEVYLEPDSDLVDILDEAFYVKDSLTREILEQWVNENFLEIPHDVIGKKANAKQGYHKYENHYITTIKPKTYEVTISETSDRPGGYVIGFENITIL
Ga0222713_1000062742F045700N/AMAIVPTKTGCFECEEGHYHNVIIDYFSHLSQGRSVVTRGVKIQRCDRCGAEMLDADASRQIEDNIERHFPGYYDKWKIKAKPRL
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