NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10000622

Scaffold Ga0222713_10000622


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10000622 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39999
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009064Metagenome / Metatranscriptome323Y
F032271Metagenome180Y
F057144Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1000062228F032271GAGMVRIHNTETNEVIDREMTNAEFAKYEAEQAAQVTAKAEAETKAAAKAALLAQLGITEEQAKLLLS
Ga0222713_100006223F057144AGTAGGMTAIVGVQGKGWAVLAADSMTTYMDKPYVAKGCDKIVKVGEYLIAVAGDAIAGDILNNLWQPPKVIKTQDPDRFMMIRILPSIKQALTEAGYDPAPKNKNDDDSGWDALICFNGKLYQVSDDYGYMRDDKGLYGIGAGGGLALGALAMMEVETKTHAKASGAAKKAINVAIQYNVWCGGPVHTKTQFTK
Ga0222713_1000062240F009064GGTGGVIVKLSQEEVRICTMLATERWLAKFGSTDKPNYAQGKADGKLEHELLSNVRANVCEWAVAKQYNQSWNVPWYPNSLHPQRKSLADVGANYEVRSIRTQTSIPFWKKDINNYIFGAKVLDVEYYSEVEVYGHIAPTDYMTDEWYDSYIEGWRVPVEQFKE

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