NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10000210

Scaffold Ga0222713_10000210


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10000210 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64534
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (17.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035761Metagenome / Metatranscriptome171Y
F048260Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1000021062F035761N/AMEQFVTTVKLDNELYTQFKEINVRARISFQDFVNKCLEKYIEDDTFRNEISESVVQQLSYNQPFQLSKSKDKKP
Ga0222713_1000021077F048260N/AMYTRKNARNKTNFVGHNTTGVELYLSTPVAGAKKASRLTLRAGDTRLDLNGRQIKALREVLAAGYNA

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