Scaffold Ga0222713_10000176

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10000176
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68883
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (73.20%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001009	Metagenome / Metatranscriptome	807	Y
F019833	Metagenome	227	Y
F020009	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1000017631	F020009	AGGA	MIDLENMPAPTAEEIAQARENAFNAERPASWVWNEELVSYVAPVAIPTDGYPYLWDEATTNWVPFPDFPRG
Ga0222713_1000017632	F001009	N/A	MASNLNSEFNYRYQVIGSTPWEKIKTLQGFYVGRKRAAVLEECAELKYQAKLEELKHLKTVPALPHILLNLQAEILELESHLDDQKHAFELNRKEIKILEKLLAELYTEVEPTRLSHEDGTPYTDDEMFEANANYEFTVTVGREIQSEIIALGRPSPAKLLNAMSNPQTLNALMQIGLVPQNTVLLEQKDIMLELTNNTFTNKDADSNSDDYSIYTEEGESDSPNNQIPLQ
Ga0222713_1000017660	F019833	GAGG	MYELRYLVRKGWDGLEKVLQYRTQIEVTDYSTTTDKGSFTKKREWTEWKDVPVVKDE