NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10155232

Scaffold Ga0222714_10155232


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10155232 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1368
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003805Metagenome / Metatranscriptome467Y
F006109Metagenome381Y
F051901Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_101552322F003805N/ALRPIEHSTESCFHKAATDQWLVDRFNAGDYRGLLEAALILNTLHQLERTKASWAIQEAADNLADHYGLDRDSA
Ga0222714_101552323F051901AGGMTPPPKLNFTKAAAEMARADYLDELFFKDGRDQLSHPLHGTYTGLYQKYTLQKLG
Ga0222714_101552325F006109N/AQMTRYVVMAGDRWVTAIYGPGKGIAVTRVKEDASSWPNYERAVVAARAAADCTNSPVAVHSIEEPAY

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