Scaffold Ga0222714_10150891

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10150891
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1395
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001781	Metagenome / Metatranscriptome	635	Y
F022414	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_101508912	F001781	GAG	MKPDDKDKLNECLKILDTTDLGLSMVWLWTWSTIKNFMEDETFIMKKTEDEMWDCLCEAVKAGMGFSLEFGAEQHYEDVMEWMLNREYMVDSMFEDEEAEDEDE
Ga0222714_101508913	F000441	AGGAGG	MKMSDEYINDQLSTAQKLLWGGSETENIEAHNIISKLIKDRVEQASN
Ga0222714_101508914	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKVALQEAAAKGITFTAEQPVKKAK
Ga0222714_101508915	F022414	AGGCGG	MSKTTETKLAEQIANLTDDHWFNPAIFGRYLAEQPLYTIDRIMEMVAYIISEQAKTYELLKVKGTSSEGLLLANELNECIKAYQETTNLSNLTLPKSVVYNIKREVKVEPRTFGYTDIDKNPFDQV