NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10150891

Scaffold Ga0222714_10150891


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10150891 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1395
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001781Metagenome / Metatranscriptome635Y
F022414Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_101508912F001781GAGMKPDDKDKLNECLKILDTTDLGLSMVWLWTWSTIKNFMEDETFIMKKTEDEMWDCLCEAVKAGMGFSLEFGAEQHYEDVMEWMLNREYMVDSMFEDEEAEDEDE
Ga0222714_101508913F000441AGGAGGMKMSDEYINDQLSTAQKLLWGGSETENIEAHNIISKLIKDRVEQASN
Ga0222714_101508914F000852AGGAMTTKREYLKQQGITVGVRGRFSGAAKVALQEAAAKGITFTAEQPVKKAK
Ga0222714_101508915F022414AGGCGGMSKTTETKLAEQIANLTDDHWFNPAIFGRYLAEQPLYTIDRIMEMVAYIISEQAKTYELLKVKGTSSEGLLLANELNECIKAYQETTNLSNLTLPKSVVYNIKREVKVEPRTFGYTDIDKNPFDQV

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