Scaffold Ga0222714_10144431

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10144431
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1436
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F027179	Metagenome	195	Y
F043935	Metagenome	155	Y
F074873	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_101444312	F043935	N/A	MTKKEIEILDDQIQYLCKNYQDRIKDVRRVTNIHPAFNFLTEVETIESLYKSLLEIRKKEKGTYFSCVTSGWHLIYLRNKKNYKHGEKFILKTFFSFVEADNYE
Ga0222714_101444313	F002398	AGGAG	MIPMISSLFFLLSGLDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNVIEKSRVDFFEYLDTIGVEHTQVGSYYFFRKKSK
Ga0222714_101444315	F027179	GAGG	MKFIYMADGLFLYETENGYAVTDQNDKILKQAKSHVTCSRYISKTLQSRRAAEREAIEKINQDKN
Ga0222714_101444316	F074873	N/A	NSITFTFDTPWGCPEHFVRELSKLYPTSNFEMVSGSIENDCHYEFTCEDGKFEETCSYDNFEDAVRDGKWGGIAEWEHLFEESEY