NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10104093

Scaffold Ga0222714_10104093


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10104093 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1788
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000645Metagenome / Metatranscriptome962Y
F002241Metagenome / Metatranscriptome579Y
F004115Metagenome / Metatranscriptome452Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_101040932F002241AGGMSKPHSIRYIRQMMEWGFDKEFIAKDCGINLASLETRLRRQEERERNGNQRTEPGTSSSQSDS
Ga0222714_101040933F000545N/AVDESWFRWALGLSEMIKDSHPFPCSNCKLVTPHIEMKRFNTEDVAEAPEEVWLVECQRCFLQRIIYPSDRVTSKEDDIVRCEQCGGWKMKSGKCRICRLAAGFEKISVKYWTGNSTMERPYDEQAPLY
Ga0222714_101040934F000645GAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADLHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKQSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVSQIANQLGAEIIDEIPLCSGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRVGSDGHWVFQK
Ga0222714_101040935F004115N/ASLDMPLSWLGADSLHQKIGTTLSLTRNHNKNQYCDYCKYRWGQNKNGWDLRATTPAVWKVQSETPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLQDAINDFAGREKLNVELP
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