Scaffold Ga0222714_10086776

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10086776
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2022
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F024504	Metagenome	205	N
F079808	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100867762	F004231	AGGAG	MSVKPKDFQHEICVYLEGVGECLVCFDILTPGDELDADHSDDYEIDFAVFDEQDKHITYDLERKHYNRCENKAYEEMLDITSQWKQEWEAV
Ga0222714_100867766	F024504	AGGAG	MDRPIVGITAPYRKSEYTYKDMLLDRIKDLEALVAKLEQRIKVLEAK
Ga0222714_100867768	F079808	GGA	MKIKDKLQAIYEDQAEVYYCCYCLEPQGEKITCCYENHFVEFKYLFPNDQKQIAQEILNG