Scaffold Ga0222714_10085155

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10085155
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2047
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → beta proteobacterium AAP99 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029052	Metagenome / Metatranscriptome	189	Y
F047655	Metagenome	149	N
F085606	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100851551	F085606	GGAG	MSGDHNMKLIASLAQTNDFVMVHGNELQAILDYVEDMEQRISIVREQLQYLVAESVEPDAEPEA
Ga0222714_100851554	F047655	AGGA	MSKKKLKDIETQAMIDKWQEELARHVAYLPILCEQAGVDEHELHRAIEIHFYVRSMSKGAMQ
Ga0222714_100851557	F029052	AGG	MEYLKRAEEYAESLGDDLWFKNLYTGFREFNNVEDSVWKTLSYLYSNDVADLLESQ