NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10051031

Scaffold Ga0222714_10051031


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10051031 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2866
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022649Metagenome213Y
F048309Metagenome / Metatranscriptome148Y
F048996Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100510313F048996N/AMLVINNIEKLEHKMLGQWSIEGVEMDSLTTRYYNYNYTIRLGRNSMGAAIIIERTEGDFGYNVSICYENYDNVISRTAWPKDRLIDKANFMASMRGVIDAEYDKNK
Ga0222714_100510314F048309N/AMLEIKNIDKVINMTCYGRPIYHISNFRNKQGEESYVFEFDAIEDGQVPTGYNKPQQIHLVRNEYDGAYRLFTMGLQMATEKKVVLSEIKSMTSLLVEISEVLRTTKNWWQYSNTKN
Ga0222714_100510315F022649N/AMLIIKNPNDIKGMNFVDGRFTLREVEIYDERYKFGFKETNRGRWVYVQVFRKPKWSSEKMQNMYQVDNGKFDSHWISAKWFAEIKNVKFTFTEALKVL

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