NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10039284

Scaffold Ga0222714_10039284


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10039284 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3406
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002317Metagenome / Metatranscriptome571Y
F003661Metagenome / Metatranscriptome474Y
F007971Metagenome / Metatranscriptome341Y
F022402Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100392844F007971GAGMAVKSKTALGRVEHKAGKPKRTSIGMGQHSRPRNRKKLRGQGKG
Ga0222714_100392845F022402AGGMPTWLWRSIVGISATITIVAAGQWASCRFMVLPRIWPWYAAYIGTPQGKSIDPTPMGCNDVDARTITVMMSVLTTLISLSRKAE
Ga0222714_100392846F002317N/AMESHDEVQTQAPPLGVASPWNQAIPALLVAAVLGLGGLFMQVAKLDQSVSTVAQDIQELKNDSKERLADLEDRVRQIEMTIGRQR
Ga0222714_100392847F003661N/AMDPTTTAIVAIVIAAGSEIITLLPIKENSWVQLIMKVLKMVFPKR

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