Scaffold Ga0222714_10036246

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10036246
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3590
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F074793	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1003624610	F074793	N/A	MHFQLPSNLQQELLAYDPKLKALAKQTENKKLAKKAKYPLGSIPHLIPEDVVRSSYQQDAIDYINSQLVPGRFRLFTKLVDVATPQARTVPIAILYHFEQCWYAAWLPQHGEDYVYGYAYAFKNTSAAAKQVPHHIWNHKEICTEHTIGRGSQLFTYSATVTKQDIINGKDGRNWRGMGIASYYQKARDINEAINKFESQLITNIPQWSDCRSIFDRLRCNNIVDALEMPAFFSKPIPDKTKYQLTVDNLITTSKLLKNDYGYSSYG
Ga0222714_100362465	F001165	N/A	MTNNKLTIPNSVDPQKLQFMQLTAKMKESADKYGVGFIGGFVAPDGEIFYMSNMNDEDTQALLPDQLK
Ga0222714_100362466	F001120	N/A	MTKKSIISFDRTIHGVNITEHGVKSLTKAIKLGPFQLTLNANPNGVKGSVSIPGTGLSIPNIKII
Ga0222714_100362468	F001807	GGA	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATRFEPEEWAPALCTATIELDPEEPIPLDEDGFCAYLDHIDPQWQLVDTSDE